IL_7U2J_152

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2J_152 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.2126

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

7U2J|1|1a|G|953
7U2J|1|1a|G|954
*
7U2J|1|1a|C|1226
7U2J|1|1a|A|1227
7U2J|1|1a|C|1228

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1m

30S ribosomal protein S13

Chain 1s

30S ribosomal protein S19

Chain 1w

Transfer RNA; tRNA

Chain 1x

Transfer RNA; tRNA