IL_7U2J_188

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

7U2J|1|2A|U|504, 7U2J|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2J_188 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0439

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

7U2J|1|2A|G|481
7U2J|1|2A|A|482
7U2J|1|2A|A|483
7U2J|1|2A|C|484
*
7U2J|1|2A|G|496
7U2J|1|2A|A|497
7U2J|1|2A|G|498
7U2J|1|2A|U|499
7U2J|1|2A|G|500
7U2J|1|2A|A|501
7U2J|1|2A|A|502
7U2J|1|2A|A|503
7U2J|1|2A|U|504
7U2J|1|2A|A|505
7U2J|1|2A|G|506
7U2J|1|2A|A|507
7U2J|1|2A|G|508
7U2J|1|2A|C|509

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24