IL_7U2J_255

3D structure

PDB id

7U2J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Gly-NH-tRNAgly, peptidyl P-site fMAC-NH-tRNAmet, deacylated E-site tRNAgly, and chloramphenicol at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

7U2J|1|2A|A|2119

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7U2J_255 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2536

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7U2J|1|2A|G|2110
7U2J|1|2A|C|2111
7U2J|1|2A|G|2112
7U2J|1|2A|U|2113
7U2J|1|2A|A|2114
7U2J|1|2A|G|2115
7U2J|1|2A|G|2116
7U2J|1|2A|A|2117
7U2J|1|2A|U|2118
7U2J|1|2A|A|2119
7U2J|1|2A|G|2120
*
7U2J|1|2A|C|2178
7U2J|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA