IL_7UCJ_007

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

7UCJ|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_007 not in the Motif Atlas

Geometric match to IL_6CZR_119

Geometric discrepancy: 0.2283

The information below is about IL_6CZR_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7UCJ|1|5|C|118
7UCJ|1|5|G|119
7UCJ|1|5|A|120
7UCJ|1|5|A|121
*
7UCJ|1|5|U|152
7UCJ|1|5|G|153

Current chains

Chain 5

28s rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

60S ribosomal protein L15

Chain h

60S ribosomal protein L35