IL_7UCJ_026

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

7UCJ|1|5|G|666, 7UCJ|1|5|A|667, 7UCJ|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_026 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2103

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

7UCJ|1|5|G|487
7UCJ|1|5|G|488
*
7UCJ|1|5|C|665
7UCJ|1|5|G|666
7UCJ|1|5|A|667
7UCJ|1|5|C|668
7UCJ|1|5|C|669

Current chains

Chain 5

28s rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

60S ribosomal protein L18

Chain r

60S ribosomal protein L28