IL_7UCJ_055
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*UG(B9B)AG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: B9B
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_055 not in the Motif Atlas
- Homologous match to IL_8C3A_033
- Geometric discrepancy: 0.1185
- The information below is about IL_8C3A_033
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
7UCJ|1|5|C|1551
7UCJ|1|5|G|1552
7UCJ|1|5|A|1553
7UCJ|1|5|A|1554
7UCJ|1|5|G|1555
*
7UCJ|1|5|U|1572
7UCJ|1|5|G|1573
7UCJ|1|5|B9B|1574
7UCJ|1|5|A|1575
7UCJ|1|5|G|1576
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain p
- 60S ribosomal protein L37a
Coloring options: