IL_7UCJ_072

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUG*C(A2M)GA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_072 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2944

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7UCJ|1|5|U|1861
7UCJ|1|5|U|1862
7UCJ|1|5|U|1863
7UCJ|1|5|G|1864
*
7UCJ|1|5|C|1870
7UCJ|1|5|A2M|1871
7UCJ|1|5|G|1872
7UCJ|1|5|A|1873

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain I

Ribosomal protein L10

Chain b

60S ribosomal protein L29