IL_7UCJ_078
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUG(OMG)CGC
- Length
- 28 nucleotides
- Bulged bases
- 7UCJ|1|5|C|1935, 7UCJ|1|5|A|2041, 7UCJ|1|5|U|2044, 7UCJ|1|5|G|2049
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_078 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.143
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
7UCJ|1|5|G|1933
7UCJ|1|5|A|1934
7UCJ|1|5|C|1935
7UCJ|1|5|C|1936
7UCJ|1|5|C|1937
7UCJ|1|5|C|1938
7UCJ|1|5|A|1939
7UCJ|1|5|G|1940
7UCJ|1|5|A|1941
7UCJ|1|5|A|1942
7UCJ|1|5|A|1943
7UCJ|1|5|A|1944
*
7UCJ|1|5|U|2038
7UCJ|1|5|G|2039
7UCJ|1|5|A|2040
7UCJ|1|5|A|2041
7UCJ|1|5|A|2042
7UCJ|1|5|A|2043
7UCJ|1|5|U|2044
7UCJ|1|5|G|2045
7UCJ|1|5|G|2046
7UCJ|1|5|A|2047
7UCJ|1|5|U|2048
7UCJ|1|5|G|2049
7UCJ|1|5|OMG|2050
7UCJ|1|5|C|2051
7UCJ|1|5|G|2052
7UCJ|1|5|C|2053
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 60S ribosomal protein L3
- Chain I
- Ribosomal protein L10
- Chain O
- 60S ribosomal protein L13a
- Chain f
- 60S ribosomal protein L35a
- Chain m
- 60S ribosomal protein L40
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