IL_7UCJ_080
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 7UCJ|1|5|A|1960
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_080 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.2946
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
7UCJ|1|5|U|1957
7UCJ|1|5|A|1958
7UCJ|1|5|U|1959
7UCJ|1|5|A|1960
7UCJ|1|5|G|1961
7UCJ|1|5|A|1962
7UCJ|1|5|C|1963
7UCJ|1|5|A|1964
7UCJ|1|5|G|1965
*
7UCJ|1|5|C|2022
7UCJ|1|5|C|2023
7UCJ|1|5|G|2024
7UCJ|1|5|A|2025
7UCJ|1|5|A|2026
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain m
- 60S ribosomal protein L40
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