3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGGAAUG*CGAGAGA
Length
14 nucleotides
Bulged bases
7UCJ|1|5|U|2661, 7UCJ|1|5|A|2674
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UCJ_098 not in the Motif Atlas
Homologous match to IL_8C3A_079
Geometric discrepancy: 0.1596
The information below is about IL_8C3A_079
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_60192.2
Basepair signature
cWW-tSH-tSH-tSS-tHS-L-R-cWW
Number of instances in this motif group
3

Unit IDs

7UCJ|1|5|U|2656
7UCJ|1|5|G|2657
7UCJ|1|5|G|2658
7UCJ|1|5|A|2659
7UCJ|1|5|A|2660
7UCJ|1|5|U|2661
7UCJ|1|5|G|2662
*
7UCJ|1|5|C|2672
7UCJ|1|5|G|2673
7UCJ|1|5|A|2674
7UCJ|1|5|G|2675
7UCJ|1|5|A|2676
7UCJ|1|5|G|2677
7UCJ|1|5|A|2678

Current chains

Chain 5
28s rRNA

Nearby chains

Chain NN
40S ribosomal protein S13
Chain R
60S ribosomal protein L19
Chain Z
60S ribosomal protein L27
Chain c
60S ribosomal protein L30
Chain g
60S ribosomal protein L34
Chain p
60S ribosomal protein L37a

Coloring options:


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