3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AGUCGG*CUGU
Length
10 nucleotides
Bulged bases
7UCJ|1|5|G|3839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UCJ_103 not in the Motif Atlas
Homologous match to IL_8C3A_083
Geometric discrepancy: 0.1106
The information below is about IL_8C3A_083
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06455.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
7

Unit IDs

7UCJ|1|5|A|2850
7UCJ|1|5|G|2851
7UCJ|1|5|U|2852
7UCJ|1|5|C|2853
7UCJ|1|5|G|2854
7UCJ|1|5|G|2855
*
7UCJ|1|5|C|3837
7UCJ|1|5|U|3838
7UCJ|1|5|G|3839
7UCJ|1|5|U|3840

Current chains

Chain 5
28s rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain V
60S ribosomal protein L23

Coloring options:


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