IL_7UCJ_127

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_127 not in the Motif Atlas

Homologous match to IL_8C3A_108

Geometric discrepancy: 0.114

The information below is about IL_8C3A_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7UCJ|1|5|C|4243
7UCJ|1|5|A|4244
7UCJ|1|5|G|4245
*
7UCJ|1|5|C|4263
7UCJ|1|5|G|4264
7UCJ|1|5|U|4265
7UCJ|1|5|G|4266
7UCJ|1|5|G|4267

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Ribosomal_L18_c domain-containing protein

Chain J

60S ribosomal protein L11

Chain T

60S ribosomal protein L21