IL_7UCJ_136

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

7UCJ|1|5|A|4518, 7UCJ|1|5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_136 not in the Motif Atlas

Geometric match to IL_4V9F_088

Geometric discrepancy: 0.1

The information below is about IL_4V9F_088

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

7UCJ|1|5|C|4458
7UCJ|1|5|U|4459
*
7UCJ|1|5|A|4517
7UCJ|1|5|A|4518
7UCJ|1|5|C|4519
7UCJ|1|5|G|4520

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L13a

Chain V

60S ribosomal protein L23