IL_7UCJ_154

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCC*GGUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_154 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.3799

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

7UCJ|1|5|G|4769
7UCJ|1|5|U|4770
7UCJ|1|5|C|4771
7UCJ|1|5|C|4772
7UCJ|1|5|C|4773
*
7UCJ|1|5|G|4862
7UCJ|1|5|G|4863
7UCJ|1|5|U|4864
7UCJ|1|5|C|4865

Current chains

Chain 5

28s rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

60S ribosomal protein L13a