IL_7UCJ_193
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 7UCJ|1|9|U|361, 7UCJ|1|9|C|399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_193 not in the Motif Atlas
- Geometric match to IL_5J7L_014
- Geometric discrepancy: 0.1093
- The information below is about IL_5J7L_014
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.3
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7UCJ|1|9|U|359
7UCJ|1|9|A|360
7UCJ|1|9|U|361
7UCJ|1|9|C|362
7UCJ|1|9|A|363
7UCJ|1|9|A|364
*
7UCJ|1|9|U|396
7UCJ|1|9|G|397
7UCJ|1|9|A|398
7UCJ|1|9|C|399
7UCJ|1|9|C|400
7UCJ|1|9|A|401
7UCJ|1|9|C|402
7UCJ|1|9|G|403
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain II
- 40S ribosomal protein S8
- Chain LL
- 40S ribosomal protein S11
- Chain XX
- 40S ribosomal protein S23
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