IL_7UCJ_202

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_202 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.3289

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7UCJ|1|9|G|535
7UCJ|1|9|A|536
7UCJ|1|9|C|537
*
7UCJ|1|9|G|546
7UCJ|1|9|G|547
7UCJ|1|9|C|548
7UCJ|1|9|C|549

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Ee

40S ribosomal protein S30