IL_7UCJ_204

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC(MMX)A*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: MMX

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_204 not in the Motif Atlas

Geometric match to IL_7LO9_003

Geometric discrepancy: 0.277

The information below is about IL_7LO9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36940.4

Basepair signature

cWW-tSH-tWW-cWW

Number of instances in this motif group

5

Unit IDs

7UCJ|1|9|U|566
7UCJ|1|9|C|567
7UCJ|1|9|MMX|568
7UCJ|1|9|A|569
*
7UCJ|1|9|U|581
7UCJ|1|9|U|582
7UCJ|1|9|A|583
7UCJ|1|9|A|584

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

40S ribosomal protein S9

Chain YY

40S ribosomal protein S24