IL_7UCJ_214
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_214 not in the Motif Atlas
- Geometric match to IL_4WF9_012
- Geometric discrepancy: 0.3803
- The information below is about IL_4WF9_012
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform; mini C-loop
- Motif group
- IL_46387.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
7UCJ|1|9|U|801
7UCJ|1|9|A|802
7UCJ|1|9|C|803
*
7UCJ|1|9|G|860
7UCJ|1|9|A|861
7UCJ|1|9|A|862
7UCJ|1|9|U|863
7UCJ|1|9|A|864
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain HH
- 40S ribosomal protein S7
- Chain LL
- 40S ribosomal protein S11
- Chain WW
- 40S ribosomal protein S15a
- Chain XX
- 40S ribosomal protein S23
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