IL_7UCJ_221

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCC*GAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_221 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3355

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7UCJ|1|9|C|927
7UCJ|1|9|G|928
7UCJ|1|9|G|929
7UCJ|1|9|C|930
7UCJ|1|9|C|931
*
7UCJ|1|9|G|1010
7UCJ|1|9|A|1011
7UCJ|1|9|A|1012
7UCJ|1|9|U|1013
7UCJ|1|9|G|1014

Current chains

Chain 9

18S rRNA

Nearby chains

Chain BB

40S ribosomal protein S3a

Chain Bb

40S ribosomal protein S27

Chain NN

40S ribosomal protein S13