3D structure

PDB id
7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 80S translation initiation complex with mRNA and Harringtonine
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGAGUAUG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UCJ_231 not in the Motif Atlas
Geometric match to IL_4V88_440
Geometric discrepancy: 0.0805
The information below is about IL_4V88_440
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

7UCJ|1|9|G|1168
7UCJ|1|9|G|1169
7UCJ|1|9|A|1170
7UCJ|1|9|G|1171
7UCJ|1|9|U|1172
7UCJ|1|9|A|1173
7UCJ|1|9|U|1174
7UCJ|1|9|G|1175
*
7UCJ|1|9|U|1186
7UCJ|1|9|G|1187
7UCJ|1|9|A|1188
7UCJ|1|9|A|1189
7UCJ|1|9|A|1190
7UCJ|1|9|C|1191

Current chains

Chain 9
18S rRNA

Nearby chains

Chain XX
40S ribosomal protein S23
Chain n
eL41

Coloring options:


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