IL_7UCJ_241

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7UCJ|1|9|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_241 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.1431

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7UCJ|1|9|G|1325
7UCJ|1|9|U|1326
7UCJ|1|9|G|1327
*
7UCJ|1|9|C|1502
7UCJ|1|9|C|1503

Current chains

Chain 9

18S rRNA

Nearby chains

Chain Dd

40S ribosomal protein S29

Chain KK

40S ribosomal protein S10