IL_7UCJ_250

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_250 not in the Motif Atlas

Geometric match to IL_4P3T_001

Geometric discrepancy: 0.1113

The information below is about IL_4P3T_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7UCJ|1|9|A|1537
7UCJ|1|9|C|1538
7UCJ|1|9|U|1539
*
7UCJ|1|9|A|1594
7UCJ|1|9|U|1595
7UCJ|1|9|U|1596

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

Ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain TT

40S ribosomal protein S19

Chain ZZ

40S ribosomal protein S25