IL_7UCJ_257

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CG(OMC)U*AAAAG

Length

9 nucleotides

Bulged bases

7UCJ|1|9|A|1825

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_257 not in the Motif Atlas

Geometric match to IL_1CSL_001

Geometric discrepancy: 0.2488

The information below is about IL_1CSL_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

7UCJ|1|9|C|1708
7UCJ|1|9|G|1709
7UCJ|1|9|OMC|1710
7UCJ|1|9|U|1711
*
7UCJ|1|9|A|1822
7UCJ|1|9|A|1823
7UCJ|1|9|A|1824
7UCJ|1|9|A|1825
7UCJ|1|9|G|1826

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain XX

40S ribosomal protein S23

Chain n

eL41