IL_7UCJ_272
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 7UCJ|1|5|A|1650, 7UCJ|1|5|G|1654
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_272 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0723
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
7UCJ|1|5|OMG|1522
7UCJ|1|5|A|1523
7UCJ|1|5|A2M|1524
7UCJ|1|5|A|1525
7UCJ|1|5|G|1526
*
7UCJ|1|5|C|1648
7UCJ|1|5|U|1649
7UCJ|1|5|A|1650
7UCJ|1|5|G|1651
7UCJ|1|5|U|1652
7UCJ|1|5|A|1653
7UCJ|1|5|G|1654
7UCJ|1|5|C|1655
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- 60S ribosomal protein L37
Coloring options: