IL_7UCJ_283

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*CGCG

Length

16 nucleotides

Bulged bases

7UCJ|1|5|A2M|3785, 7UCJ|1|5|C|3791, 7UCJ|1|5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_283 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1895

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

7UCJ|1|5|C|3781
7UCJ|1|5|5MC|3782
7UCJ|1|5|A|3783
7UCJ|1|5|A|3784
7UCJ|1|5|A2M|3785
7UCJ|1|5|U|3786
7UCJ|1|5|G|3787
7UCJ|1|5|C|3788
7UCJ|1|5|C|3789
7UCJ|1|5|U|3790
7UCJ|1|5|C|3791
7UCJ|1|5|OMG|3792
*
7UCJ|1|5|C|3808
7UCJ|1|5|G|3809
7UCJ|1|5|C|3810
7UCJ|1|5|G|3811

Current chains

Chain 5

28s rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain n

eL41