IL_7UCJ_287

3D structure

PDB id

7UCJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 80S translation initiation complex with mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC(PSU)UG*UGA(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCJ_287 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.557

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7UCJ|1|5|G|4401
7UCJ|1|5|C|4402
7UCJ|1|5|PSU|4403
7UCJ|1|5|U|4404
7UCJ|1|5|G|4405
*
7UCJ|1|5|U|4439
7UCJ|1|5|G|4440
7UCJ|1|5|A|4441
7UCJ|1|5|PSU|4442

Current chains

Chain 5

28s rRNA

Nearby chains

Chain I

Ribosomal protein L10

Chain b

60S ribosomal protein L29