IL_7UCJ_288
3D structure
- PDB id
- 7UCJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 80S translation initiation complex with mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUUG*CCAAGCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCJ_288 not in the Motif Atlas
- Homologous match to IL_8GLP_315
- Geometric discrepancy: 0.0865
- The information below is about IL_8GLP_315
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56912.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7UCJ|1|5|C|4466
7UCJ|1|5|A|4467
7UCJ|1|5|U|4468
7UCJ|1|5|U|4469
7UCJ|1|5|G|4470
*
7UCJ|1|5|C|4485
7UCJ|1|5|C|4486
7UCJ|1|5|A|4487
7UCJ|1|5|A|4488
7UCJ|1|5|G|4489
7UCJ|1|5|C|4490
7UCJ|1|5|G|4491
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L9
- Chain O
- 60S ribosomal protein L13a
- Chain V
- 60S ribosomal protein L23
- Chain m
- 60S ribosomal protein L40
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