IL_7UCK_133

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7UCK|1|5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_133 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1612

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7UCK|1|5|G|4405
7UCK|1|5|U|4406
7UCK|1|5|G|4407
*
7UCK|1|5|U|4435
7UCK|1|5|U|4436
7UCK|1|5|U|4437
7UCK|1|5|U|4438
7UCK|1|5|U|4439

Current chains

Chain 5

28s rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain I

Ribosomal protein L10