IL_7UCK_139

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

7UCK|1|5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_139 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3939

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7UCK|1|5|U|4468
7UCK|1|5|U|4469
7UCK|1|5|G|4470
*
7UCK|1|5|C|4485
7UCK|1|5|C|4486
7UCK|1|5|A|4487
7UCK|1|5|A|4488
7UCK|1|5|G|4489

Current chains

Chain 5

28s rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

60S ribosomal protein L13a

Chain m

60S ribosomal protein L40