IL_7UCK_229

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAU*GCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_229 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.1568

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7UCK|1|9|C|1098
7UCK|1|9|G|1099
7UCK|1|9|A|1100
7UCK|1|9|U|1101
*
7UCK|1|9|G|1131
7UCK|1|9|C|1132
7UCK|1|9|A|1133
7UCK|1|9|G|1134

Current chains

Chain 9

18S rRNA

Nearby chains

Chain AA

40S_SA_C domain-containing protein

Chain Aa

eS26

Chain BB

40S ribosomal protein S3a

Chain NN

40S ribosomal protein S13

Chain RR

40S ribosomal protein S17