IL_7UCK_245
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- C(4AC)G*CAGG
- Length
- 7 nucleotides
- Bulged bases
- 7UCK|1|9|A|1489
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCK_245 not in the Motif Atlas
- Geometric match to IL_4P3T_005
- Geometric discrepancy: 0.1215
- The information below is about IL_4P3T_005
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
7UCK|1|9|C|1336
7UCK|1|9|4AC|1337
7UCK|1|9|G|1338
*
7UCK|1|9|C|1488
7UCK|1|9|A|1489
7UCK|1|9|G|1490
7UCK|1|9|G|1491
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain CC
- 40S ribosomal protein S2
- Chain DD
- 40S ribosomal protein S3
- Chain Dd
- 40S ribosomal protein S29
- Chain QQ
- 40S ribosomal protein S16
- Chain UU
- 40S ribosomal protein S20
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