IL_7UCK_255

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

7UCK|1|9|C|1701, 7UCK|1|9|A|1835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_255 not in the Motif Atlas

Geometric match to IL_5J7L_058

Geometric discrepancy: 0.1413

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

7UCK|1|9|C|1700
7UCK|1|9|C|1701
7UCK|1|9|G|1702
*
7UCK|1|9|C|1833
7UCK|1|9|A|1834
7UCK|1|9|A|1835
7UCK|1|9|G|1836

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 1

mRNA

Chain 2

Transfer RNA; tRNA

Chain Aa

eS26