IL_7UCK_262

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUU*G(M7A)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_262 not in the Motif Atlas

Homologous match to IL_8P9A_459

Geometric discrepancy: 0.3519

The information below is about IL_8P9A_459

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

7UCK|1|9|G|1727
7UCK|1|9|U|1728
7UCK|1|9|U|1729
*
7UCK|1|9|G|1805
7UCK|1|9|M7A|1806
7UCK|1|9|C|1807

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain II

40S ribosomal protein S8

Chain V

60S ribosomal protein L23