IL_7UCK_266

3D structure

PDB id

7UCK (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S translation initiation complex with ac4c(-1) mRNA and Harringtonine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UCK_266 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1035

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7UCK|1|9|C|1742
7UCK|1|9|G|1743
7UCK|1|9|G|1744
7UCK|1|9|A|1745
7UCK|1|9|U|1746
*
7UCK|1|9|A|1788
7UCK|1|9|G|1789
7UCK|1|9|A|1790
7UCK|1|9|A|1791
7UCK|1|9|G|1792

Current chains

Chain 9

18S rRNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain II

40S ribosomal protein S8

Chain W

Ribosomal protein L24