IL_7UCK_280
3D structure
- PDB id
- 7UCK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S translation initiation complex with ac4c(-1) mRNA and Harringtonine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7UCK_280 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.086
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
7UCK|1|5|G|2358
7UCK|1|5|U|2359
7UCK|1|5|A|2360
7UCK|1|5|G|2361
7UCK|1|5|U|2362
7UCK|1|5|A2M|2363
7UCK|1|5|OMG|2364
*
7UCK|1|5|C|3858
7UCK|1|5|G|3859
7UCK|1|5|A|3860
7UCK|1|5|A|3861
7UCK|1|5|A|3862
7UCK|1|5|C|3863
Current chains
- Chain 5
- 28s rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L17
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