IL_7UG6_088

3D structure

PDB id

7UG6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of pre-60S ribosomal subunit, unmethylated G2922

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7UG6|1|1|G|2945, 7UG6|1|1|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG6_088 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.1354

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7UG6|1|1|C|2879
7UG6|1|1|U|2880
7UG6|1|1|C|2881
*
7UG6|1|1|G|2943
7UG6|1|1|U|2944
7UG6|1|1|G|2945
7UG6|1|1|A|2946
7UG6|1|1|G|2947

Current chains

Chain 1

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain V

60S ribosomal protein L23-A

Chain b

Nucleolar GTP-binding protein 1