IL_7UG7_037

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_037 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0841

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7UG7|1|16|G|887
7UG7|1|16|G|888
7UG7|1|16|A|889
7UG7|1|16|G|890
7UG7|1|16|U|891
7UG7|1|16|A|892
7UG7|1|16|C|893
7UG7|1|16|G|894
*
7UG7|1|16|U|905
7UG7|1|16|A|906
7UG7|1|16|A|907
7UG7|1|16|A|908
7UG7|1|16|A|909
7UG7|1|16|C|910

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12