IL_7UG7_046

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

7UG7|1|16|C|1200, 7UG7|1|16|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_046 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1068

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7UG7|1|16|G|1057
7UG7|1|16|G|1058
*
7UG7|1|16|U|1199
7UG7|1|16|C|1200
7UG7|1|16|A|1201
7UG7|1|16|U|1202
7UG7|1|16|C|1203

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SC

30S ribosomal protein S3

Chain SJ

30S ribosomal protein S10

Chain SN

30S ribosomal protein S14