IL_7UG7_070

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_070 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0769

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7UG7|1|23|C|239
7UG7|1|23|C|240
7UG7|1|23|A|241
7UG7|1|23|G|242
7UG7|1|23|U|243
7UG7|1|23|A|244
7UG7|1|23|G|245
*
7UG7|1|23|C|253
7UG7|1|23|G|254
7UG7|1|23|A|255
7UG7|1|23|A|256
7UG7|1|23|C|257
7UG7|1|23|G|258

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LO

50S ribosomal protein L15

Chain Li

50S ribosomal protein L35