IL_7UG7_079

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7UG7|1|23|G|801, 7UG7|1|23|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_079 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0613

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7UG7|1|23|G|674
7UG7|1|23|A|675
7UG7|1|23|A|676
7UG7|1|23|A|677
7UG7|1|23|C|678
*
7UG7|1|23|G|799
7UG7|1|23|A|800
7UG7|1|23|G|801
7UG7|1|23|A|802
7UG7|1|23|U|803
7UG7|1|23|A|804
7UG7|1|23|G|805
7UG7|1|23|C|806

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LD

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15