IL_7UG7_110

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_110 not in the Motif Atlas

Geometric match to IL_5J7L_291

Geometric discrepancy: 0.1168

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

7UG7|1|23|C|1319
7UG7|1|23|C|1320
7UG7|1|23|A|1321
7UG7|1|23|A|1322
7UG7|1|23|C|1323
*
7UG7|1|23|G|1331
7UG7|1|23|G|1332
7UG7|1|23|G|1333

Current chains

Chain 23

23S rRNA

Nearby chains

Chain LV

50S ribosomal protein L22

Chain LW

50S ribosomal protein L23