IL_7UG7_147

3D structure

PDB id

7UG7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B

Experimental method

ELECTRON MICROSCOPY

Resolution

2.58 Å

Loop

Sequence

UGAUG*CUUUA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UG7_147 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.378

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7UG7|1|23|U|2106
7UG7|1|23|G|2107
7UG7|1|23|A|2108
7UG7|1|23|U|2109
7UG7|1|23|G|2110
*
7UG7|1|23|C|2179
7UG7|1|23|U|2180
7UG7|1|23|U|2181
7UG7|1|23|U|2182
7UG7|1|23|A|2183

Current chains

Chain 23

23S rRNA

Nearby chains

Chain Dt

Transfer RNA; tRNA

Chain LA

50S ribosomal protein L1