3D structure

PDB id
7UG7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex in an intermediate state of translocation bound to EF-G(GDP) stalled by Argyrin B
Experimental method
ELECTRON MICROSCOPY
Resolution
2.58 Å

Loop

Sequence
CUAGUAC*GGACCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UG7_166 not in the Motif Atlas
Geometric match to IL_5J7L_346
Geometric discrepancy: 0.0987
The information below is about IL_5J7L_346
Detailed Annotation
Sarcin-Ricin target in LSU H95; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_16458.4
Basepair signature
cWW-L-R-L-R-cSH-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7UG7|1|23|C|2652
7UG7|1|23|U|2653
7UG7|1|23|A|2654
7UG7|1|23|G|2655
7UG7|1|23|U|2656
7UG7|1|23|A|2657
7UG7|1|23|C|2658
*
7UG7|1|23|G|2663
7UG7|1|23|G|2664
7UG7|1|23|A|2665
7UG7|1|23|C|2666
7UG7|1|23|C|2667
7UG7|1|23|G|2668

Current chains

Chain 23
23S rRNA

Nearby chains

Chain EF
Elongation factor G
Chain LF
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.7377 s