IL_7UNR_006

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNR_006 not in the Motif Atlas

Geometric match to IL_7A0S_006

Geometric discrepancy: 0.0695

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7UNR|1|A|G|188
7UNR|1|A|G|189
7UNR|1|A|A|190
7UNR|1|A|A|191
7UNR|1|A|C|192
7UNR|1|A|U|193
7UNR|1|A|G|194
*
7UNR|1|A|C|201
7UNR|1|A|U|202
7UNR|1|A|A|203
7UNR|1|A|A|204
7UNR|1|A|G|205
7UNR|1|A|U|206
7UNR|1|A|A|207
7UNR|1|A|C|208

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain N

50S ribosomal protein L15

Chain Z

50S ribosomal protein L28