IL_7UNR_018

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7UNR|1|A|G|791, 7UNR|1|A|G|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNR_018 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0887

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7UNR|1|A|G|664
7UNR|1|A|A|665
7UNR|1|A|A|666
7UNR|1|A|A|667
7UNR|1|A|C|668
*
7UNR|1|A|G|789
7UNR|1|A|A|790
7UNR|1|A|G|791
7UNR|1|A|A|792
7UNR|1|A|U|793
7UNR|1|A|A|794
7UNR|1|A|G|795
7UNR|1|A|C|796

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain N

50S ribosomal protein L15