3D structure

PDB id
7UNR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNR_094 not in the Motif Atlas
Geometric match to IL_5J7L_337
Geometric discrepancy: 0.0954
The information below is about IL_5J7L_337
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_51387.2
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
20

Unit IDs

7UNR|1|A|A|2446
7UNR|1|A|U|2447
7UNR|1|A|A|2448
*
7UNR|1|A|U|2476
7UNR|1|A|G|2477
7UNR|1|A|U|2478
7UNR|1|A|U|2479
7UNR|1|A|U|2480

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain O
50S ribosomal protein L16

Coloring options:


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