3D structure

PDB id
7UNR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CAU*AG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7UNR_120 not in the Motif Atlas
Homologous match to IL_6CZR_116
Geometric discrepancy: 0.2348
The information below is about IL_6CZR_116
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.1
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

7UNR|1|a|C|54
7UNR|1|a|A|55
7UNR|1|a|U|56
*
7UNR|1|a|A|350
7UNR|1|a|G|351

Current chains

Chain a
16S Ribosomal RNA

Nearby chains

Chain x
Translation initiation factor IF-2

Coloring options:


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