IL_7UNR_136

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAG*CAGAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNR_136 not in the Motif Atlas

Homologous match to IL_5J7L_021

Geometric discrepancy: 0.1986

The information below is about IL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33323.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

7UNR|1|a|A|434
7UNR|1|a|A|435
7UNR|1|a|G|436
*
7UNR|1|a|C|486
7UNR|1|a|A|487
7UNR|1|a|G|488
7UNR|1|a|A|489
7UNR|1|a|A|490
7UNR|1|a|U|491

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4