IL_7UNR_184

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNR_184 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0758

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7UNR|1|A|G|1656
7UNR|1|A|G|1657
7UNR|1|A|A|1658
7UNR|1|A|A|1659
7UNR|1|A|C|1660
7UNR|1|A|U|1661
7UNR|1|A|A|1662
7UNR|1|A|G|1663
7UNR|1|A|G|1664
*
7UNR|1|A|C|1977
7UNR|1|A|U|1978
7UNR|1|A|G|1979
7UNR|1|A|U|1980
7UNR|1|A|C|1981

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L14