IL_7UNR_185

3D structure

PDB id

7UNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7UNR_185 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1023

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7UNR|1|A|U|1838
7UNR|1|A|U|1839
7UNR|1|A|A|1840
7UNR|1|A|A|1841
7UNR|1|A|U|1842
7UNR|1|A|U|1843
7UNR|1|A|G|1844
7UNR|1|A|A|1845
7UNR|1|A|U|1846
7UNR|1|A|G|1847
*
7UNR|1|A|U|1869
7UNR|1|A|U|1870
7UNR|1|A|G|1871
7UNR|1|A|A|1872
7UNR|1|A|U|1873
7UNR|1|A|C|1874
7UNR|1|A|G|1875
7UNR|1|A|A|1876
7UNR|1|A|A|1877
7UNR|1|A|G|1878

Current chains

Chain A

23S Ribosomal RNA

Nearby chains